About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113393484_113396221_R

Intron Information:

Intron Rank:
30
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
113393484 - 113396221
Intron Length:
2738

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCG|GCAGGAAAA
5'SS Class:
major
3'SS Sequence:
TATTTTTAAGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTTTCTTTATTT
Flanking Amino Acid:
SGHGLLLGKCEGLEKGNRIR
Intron Amino Acid Position:
2006

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.3
60.5
43.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
55.2
0.12
1.8
67.4
42.5
Minor 5ss
21.6
-3.3
3.8
31.2
42.7
Minor BPS
70.4
0.72
1.5
84.38
36.8

Associated Gene:

Gene:
PKHD1
Ensembl Gene ID:
ENSAPLG00000013410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014007
113257700 - 113495565
237866