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Intron Name: Anas_platyrhynchos_platyrhynchos_3_113396357_113397540_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

113396357 - 113397540

Intron Length:

1184

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGACAG

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTCAC

U12 Branch Point Sequence:

TTTTTGCTCACA

Flanking Amino Acid:

LTVAGDAQMADSYIRGCSVL

Intron Amino Acid Position:

1961

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

0.9

67.7

39.3

Major BPS

69.8

0.49

1.1

71.3

36.7

Major PPT

96.8

1.05

0.5

96.1

13.2

Minor 5ss

25.9

-2.8

2.9

29.3

43.4

Minor BPS

45.9

-0.3

2.6

71.21

41.3

Associated Gene:

Gene:

PKHD1

Ensembl Gene ID:

ENSAPLG00000013410

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014007

113257700 - 113495565

237866