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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113399479_113400456_R

Intron Information:

Intron Rank:
27
Intron Class:
minor-like
Intron Phase:
2
Intron Coordinates:
113399479 - 113400456
Intron Length:
978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCTTT
5'SS Class:
weak_minor
3'SS Sequence:
TGTCTTTCTCTAG|G
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
CCTTCTTTATGT
Flanking Amino Acid:
NTVIYLRSPLRYSHNVGEER
Intron Amino Acid Position:
1843

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.2
71.4
41.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
80.9
0.69
0.8
73.8
36.9
Minor 5ss
89.8
1.34
1.2
90.9
28.7
Minor BPS
53.7
0.2
1.9
70.73
46.8

Associated Gene:

Gene:
PKHD1
Ensembl Gene ID:
ENSAPLG00000013410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014007
113257700 - 113495565
237866