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Intron Name: Anas_platyrhynchos_platyrhynchos_3_113400665_113415850_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

113400665 - 113415850

Intron Length:

15186

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTACA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCCCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

CTTTTTTTAACT

Flanking Amino Acid:

AVRNGTLSIHGWMPKVAFTQ

Intron Amino Acid Position:

1774

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

77.1

Major BPS

87.3

0.93

0.8

36.5

Major PPT

91.5

0.93

0.6

89.8

18.5

Minor 5ss

31.1

-2.2

2.6

35.6

40.5

Minor BPS

81.9

1.08

90.89

33.1

Associated Gene:

Gene:

PKHD1

Ensembl Gene ID:

ENSAPLG00000013410

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014007

113257700 - 113495565

237866