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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11343558_11395568_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11343558 - 11395568
Intron Length:
52011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
GTTCTTTCAATT
Flanking Amino Acid:
VEMELGKNGQESEFLCLEFD
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.9
78.8
38.3
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
47.5
-0.2
2.8
64.1
47.4
Minor BPS
58
0.33
1.5
73.95
37.1

Associated Gene:

Gene:
COMMD1
Ensembl Gene ID:
ENSAPLG00000006974
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033853
11343450 - 11420325
76876
ENSAPLT00000021390
11343450 - 11416553
73104
ENSAPLT00000021183
11343450 - 11418117
74668
ENSAPLT00000007228
11343450 - 11416827
73378