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Intron Name: Anas_platyrhynchos_platyrhynchos_3_113451648_113456133_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

113451648 - 113456133

Intron Length:

4486

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGCTCT

5'SS Class:

major

3'SS Sequence:

CTTCTCGTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAC

U12 Branch Point Sequence:

CCCCATTTAACC

Flanking Amino Acid:

SRRHLAGLFSSPKVERDEVL

Intron Amino Acid Position:

1602

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.66

1.2

73.5

38.1

Major BPS

80.9

0.77

0.8

81.7

25.4

Major PPT

83.1

0.74

0.8

80.4

31.6

Minor 5ss

42.8

-0.8

2.8

57.9

46.3

Minor BPS

0.04

1.6

56.02

42.7

Associated Gene:

Gene:

PKHD1

Ensembl Gene ID:

ENSAPLG00000013410

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014007

113257700 - 113495565

237866