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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113467862_113469266_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113467862 - 113469266
Intron Length:
1405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGTGG
5'SS Class:
major
3'SS Sequence:
GCTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAC
U12 Branch Point Sequence:
CAAACCCAAACC
Flanking Amino Acid:
IINGVAVTSNRAELLIHYVS
Intron Amino Acid Position:
923

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.41
1.1
54.1
45.4
Major BPS
50.8
0.02
0.9
57
25.1
Major PPT
82.4
0.73
0.9
76.3
37.7
Minor 5ss
34.8
-1.7
3.5
46.9
48.5
Minor BPS
45.6
-0.3
2
54.14
43

Associated Gene:

Gene:
PKHD1
Ensembl Gene ID:
ENSAPLG00000013410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014007
113257700 - 113495565
237866