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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113474382_113475185_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113474382 - 113475185
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTATCCTTGATG
Flanking Amino Acid:
TRIECKVPSRGAEDTAVHVT
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
72.1
34.3
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
84.5
0.78
0.8
76.2
37.8
Minor 5ss
37.8
-1.4
3
42.5
44.6
Minor BPS
76.3
0.68
1.2
75.31
36.7

Associated Gene:

Gene:
PKHD1
Ensembl Gene ID:
ENSAPLG00000013410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014007
113257700 - 113495565
237866