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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113475317_113477813_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113475317 - 113477813
Intron Length:
2497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTCTG
5'SS Class:
major
3'SS Sequence:
ATTGTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTTGAAGTAACA
Flanking Amino Acid:
AIEPPRASEIGGLRVALRGT
Intron Amino Acid Position:
769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
65.4
46
Major BPS
74.8
0.62
1
67
39.8
Major PPT
82.3
0.73
0.8
77.7
36
Minor 5ss
36.6
-1.5
3.3
46.2
43.5
Minor BPS
46.6
-0.2
2.4
69.45
42.6

Associated Gene:

Gene:
PKHD1
Ensembl Gene ID:
ENSAPLG00000013410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014007
113257700 - 113495565
237866