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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113479744_113479785_R

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
113479744 - 113479785
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGATTCACGCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TCATACTTACTA
Flanking Amino Acid:
MLATFNNQTQSCRSRSLTGV
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.4
19.4
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
51.9
0.04
1.2
50.7
42.8
Minor 5ss
34.1
-1.8
2.8
39.9
46.1
Minor BPS
54.6
0.14
1.8
64.88
41.8

Associated Gene:

Gene:
PKHD1
Ensembl Gene ID:
ENSAPLG00000013410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014007
113257700 - 113495565
237866