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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113479909_113480919_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
113479909 - 113480919
Intron Length:
1011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTACAGTAA
5'SS Class:
weak_major
3'SS Sequence:
TTTTCTTTGCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TAGTGATAAACT
Flanking Amino Acid:
KTGDLPNVISVSAENLTGLK
Intron Amino Acid Position:
617

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50
0
1.2
49.2
37.8
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
85.2
0.79
0.9
80.8
36.8
Minor 5ss
36.3
-1.6
3.6
45.7
49.5
Minor BPS
47.4
-0.1
2.3
70.14
46.3

Associated Gene:

Gene:
PKHD1
Ensembl Gene ID:
ENSAPLG00000013410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014007
113257700 - 113495565
237866