About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113482126_113484226_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
113482126 - 113484226
Intron Length:
2101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGACA
5'SS Class:
strong_major
3'SS Sequence:
CAGAGGATGTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTCCAC
U12 Branch Point Sequence:
TATGTCTCCACA
Flanking Amino Acid:
CGASLPLLSLRVSVITQRLQ
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
72.3
39
Major BPS
54.8
0.12
1.3
66.4
39.9
Major PPT
40.7
-0.5
1.7
35.7
44.3
Minor 5ss
31.2
-2.2
3.3
40.2
45.7
Minor BPS
48
-0.1
2.1
64.13
42.4

Associated Gene:

Gene:
PKHD1
Ensembl Gene ID:
ENSAPLG00000013410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014007
113257700 - 113495565
237866