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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113486177_113487124_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113486177 - 113487124
Intron Length:
948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
TRYDLTEYTHVCFAHKGHMS
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.3
66.6
39.6
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
100
1.12
0.4
100
0
Minor 5ss
29
-2.4
3.1
33.7
35
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
PKHD1
Ensembl Gene ID:
ENSAPLG00000013410
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014007
113257700 - 113495565
237866