Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113516260_113520445_R

Intron Information:

Intron Rank:

144132

Intron Class:

major

Intron Phase:

Intron Coordinates:

113516260 - 113520445

Intron Length:

4186

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

ATGTGCTTCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TGACCTTTTATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.2

1.11

0.7

90.9

28.7

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

72.4

0.5

65.8

40.3

Minor 5ss

40.2

-1.1

3.1

58.6

45.9

Minor BPS

55.9

0.27

1.6

70.89

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024790

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048517

113515968 - 113520811

4844

ENSAPLT00000043534

113515968 - 113521580

5613