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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113520509_113521458_R

Intron Information:

Intron Rank:
144133
Intron Class:
major
Intron Phase:
Intron Coordinates:
113520509 - 113521458
Intron Length:
950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGAAC
5'SS Class:
major
3'SS Sequence:
ATCACCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATCACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
70.9
34.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.8
0.49
0.9
64.7
35.7
Minor 5ss
27.3
-2.6
3
30.7
36.9
Minor BPS
49
0
2
74.43
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024790
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043534
113515968 - 113521580
5613