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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113555533_113556105_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113555533 - 113556105
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CGTTTGTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
GTGTCCTAAATA
Flanking Amino Acid:
KMSPTLRASLSSSLLLVLLA
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.9
32.8
Major BPS
62
0.3
1
62.3
30.4
Major PPT
80.3
0.68
0.9
77
37.3
Minor 5ss
36.3
-1.6
3
48
41.5
Minor BPS
65.3
0.48
1.7
71.79
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028302
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047220
113555403 - 113557845
2443