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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113556351_113557068_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113556351 - 113557068
Intron Length:
718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGATCA
5'SS Class:
strong_major
3'SS Sequence:
TGTCAACTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCATGTCAACT
Flanking Amino Acid:
SKRSLSPWDYRIDEDHNRFP
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.5
34.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
74.3
0.55
0.9
65.9
39.7
Minor 5ss
37.2
-1.5
3.2
48.6
47
Minor BPS
48.3
-0
2.3
72.3
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028302
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047220
113555403 - 113557845
2443