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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113565122_113565716_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113565122 - 113565716
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCCT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTGTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
AAACACATAAAA
Flanking Amino Acid:
RNRSLAPWDYRLDKDPNRFP
Intron Amino Acid Position:
88

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1.1
75.3
40.8
Major BPS
61.1
0.28
1
67
29.8
Major PPT
74.7
0.56
0.8
72.1
32.5
Minor 5ss
42.4
-0.8
2.9
60.3
44
Minor BPS
45.2
-0.3
1.8
53.83
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013357
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013903
113564884 - 113567346
2463