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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113565953_113566860_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113565953 - 113566860
Intron Length:
908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATGAT
U12 Branch Point Sequence:
GAGACTATGATA
Flanking Amino Acid:
MAFASYAAMFRSLLLVLVL
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
72.3
0.55
1.1
63.4
42.8
Major PPT
85.5
0.8
0.8
77.5
36.9
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
45.5
-0.3
1.5
49.23
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013357
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013903
113564884 - 113567346
2463