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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113578804_113579602_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113578804 - 113579602
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGCTTCTCACCT
Flanking Amino Acid:
DAKKPELADPRLKAFKAALL
Intron Amino Acid Position:
745

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
66.3
0.37
0.9
58.7
37.4
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
53.3
0.18
1.9
72.31
44.6

Associated Gene:

Gene:
MCM3
Ensembl Gene ID:
ENSAPLG00000013058
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013655
113578605 - 113587859
9255