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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113579679_113579838_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113579679 - 113579838
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
CTTCCTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGGTAAC
U12 Branch Point Sequence:
CGGAAGGTAACT
Flanking Amino Acid:
FSDAEQEMPEVQAHTPKTPE
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.9
42.8
Major BPS
50.5
0.01
1.3
53.1
40.5
Major PPT
82.1
0.72
0.7
73.4
31.5
Minor 5ss
27.7
-2.6
2.7
23.9
36.9
Minor BPS
37.9
-0.8
2.6
54.01
47

Associated Gene:

Gene:
MCM3
Ensembl Gene ID:
ENSAPLG00000013058
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013655
113578605 - 113587859
9255