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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113580279_113580669_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113580279 - 113580669
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGGAA
5'SS Class:
major
3'SS Sequence:
CACCCTTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTGAA
U12 Branch Point Sequence:
GGGCTGAGAACT
Flanking Amino Acid:
ELVQFAYFKKVLEKEKKRKK
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
65.3
36.2
Major BPS
67.1
0.42
1
59
37.9
Major PPT
70
0.45
1
64.3
36.2
Minor 5ss
21.7
-3.3
3.4
27.5
44.3
Minor BPS
38.6
-0.7
2.1
52.76
41.5

Associated Gene:

Gene:
MCM3
Ensembl Gene ID:
ENSAPLG00000013058
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013655
113578605 - 113587859
9255