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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113580811_113581017_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113580811 - 113581017
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCTTC
5'SS Class:
major
3'SS Sequence:
TTTTTCACCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCTTTTTTCACC
Flanking Amino Acid:
QNQMSSDIARTSPVTARTLE
Intron Amino Acid Position:
611

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.2
38.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.2
0.73
0.8
74.9
34.7
Minor 5ss
42.5
-0.8
3
50.6
46.1
Minor BPS
63
0.39
1.7
72.92
38.9

Associated Gene:

Gene:
MCM3
Ensembl Gene ID:
ENSAPLG00000013058
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013655
113578605 - 113587859
9255