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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113581169_113581459_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113581169 - 113581459
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
GTGTGTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CTCTCCTGAAGG
Flanking Amino Acid:
DDLLHGPNRRKEKIVSMEFM
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
68.6
36.4
Major BPS
69.6
0.49
1
59.5
39
Major PPT
68.9
0.43
1
61.5
40.2
Minor 5ss
31.8
-2.1
2.8
37.4
33.2
Minor BPS
54.1
-0
1.9
59.75
47.8

Associated Gene:

Gene:
MCM3
Ensembl Gene ID:
ENSAPLG00000013058
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013655
113578605 - 113587859
9255