Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113585329_113585931_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

113585329 - 113585931

Intron Length:

603

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGTGG

5'SS Class:

strong_major

3'SS Sequence:

CTTCCTCCTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAT

U12 Branch Point Sequence:

AATCCTTTTACT

Flanking Amino Acid:

FPSSSVYPTKDEENNPLETE

Intron Amino Acid Position:

179

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

66.5

41.6

Major BPS

79.3

0.73

1.1

77.9

34.9

Major PPT

72.3

0.5

75.8

26.8

Minor 5ss

30.7

-2.2

3.2

37.8

47.1

Minor BPS

62.7

0.48

1.6

77.1

39.1

Associated Gene:

Gene:

MCM3

Ensembl Gene ID:

ENSAPLG00000013058

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013655

113578605 - 113587859

9255