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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113610393_113614616_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113610393 - 113614616
Intron Length:
4224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCACA
5'SS Class:
major
3'SS Sequence:
TTTTCTTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGTGTTTTAACA
Flanking Amino Acid:
LPGCAFRDPTKTSFHRSQTL
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
68
38.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
87.5
0.84
0.7
81.1
30.9
Minor 5ss
34.7
-1.7
2.8
41.9
44.5
Minor BPS
65.4
0.48
1.3
69.66
36.8

Associated Gene:

Gene:
EFHC1
Ensembl Gene ID:
ENSAPLG00000012873
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013409
113608740 - 113626607
17868