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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113616613_113618305_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113616613 - 113618305
Intron Length:
1693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTGC
5'SS Class:
strong_major
3'SS Sequence:
ATGACTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
AATACCTTAGAT
Flanking Amino Acid:
HIVDCDPFTQAFLESQGIEL
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
71
35.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
66.9
0.38
0.9
58.5
42.3
Minor 5ss
41.2
-1
2.7
52.5
44.7
Minor BPS
58.3
0.34
1.7
74.49
41.3

Associated Gene:

Gene:
EFHC1
Ensembl Gene ID:
ENSAPLG00000012873
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013409
113608740 - 113626607
17868