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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113619777_113620078_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113619777 - 113620078
Intron Length:
302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTGCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTTAT
U12 Branch Point Sequence:
ATTGATTTATTT
Flanking Amino Acid:
RLPKTFVEKQKTFPSCVLEI
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
70.9
0.52
1.2
63.7
43.9
Major PPT
72.1
0.5
0.9
69.3
37
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
49.7
0.06
1.8
70.74
40.9

Associated Gene:

Gene:
EFHC1
Ensembl Gene ID:
ENSAPLG00000012873
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013409
113608740 - 113626607
17868