About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113621312_113622535_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113621312 - 113622535
Intron Length:
1224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTTTCCAAAGCC
Flanking Amino Acid:
HKVLRYQVALESPNPEDRKR
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
77.3
0.68
1
81.5
27
Major PPT
79.8
0.67
0.7
72.5
32.3
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
52.8
0.07
2.2
75.46
40.9

Associated Gene:

Gene:
EFHC1
Ensembl Gene ID:
ENSAPLG00000012873
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013409
113608740 - 113626607
17868