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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113622750_113623359_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113622750 - 113623359
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACCC
5'SS Class:
strong_major
3'SS Sequence:
GCCTCTTCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTGCTTTAATG
Flanking Amino Acid:
SDFTIGSTIEVFGHRFVITD
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
72.5
37.3
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
73.8
0.54
0.8
67.7
32.4
Minor 5ss
33.2
-1.9
3.1
43.3
43.8
Minor BPS
66.2
0.37
1.5
66.31
42.6

Associated Gene:

Gene:
EFHC1
Ensembl Gene ID:
ENSAPLG00000012873
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013409
113608740 - 113626607
17868