Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113623508_113624326_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

113623508 - 113624326

Intron Length:

819

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGCTTC

5'SS Class:

strong_major

3'SS Sequence:

TTTCCTTCTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTACAT

U12 Branch Point Sequence:

ATTACATGAAAT

Flanking Amino Acid:

PQQVVEETAKSDVPALGTSQ

Intron Amino Acid Position:

547

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

73.2

39.3

Major BPS

73.9

0.59

30.2

Major PPT

89.1

0.88

0.6

84.1

24.1

Minor 5ss

-0.3

3.1

66.9

44.7

Minor BPS

52.3

0.15

1.9

75.54

39.9

Associated Gene:

Gene:

EFHC1

Ensembl Gene ID:

ENSAPLG00000012873

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013409

113608740 - 113626607

17868