Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113632796_113632976_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

113632796 - 113632976

Intron Length:

181

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGCATC

5'SS Class:

major

3'SS Sequence:

TTTCCATCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

TCTCTTTCCATC

Flanking Amino Acid:

QQAKPLKRDSGYHENGVVKA

Intron Amino Acid Position:

309

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

72.2

39.5

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

78.3

0.64

0.8

70.2

35.3

Minor 5ss

38.1

-1.3

43.8

Minor BPS

44.5

-0.4

1.8

54.74

38.3

Associated Gene:

Gene:

TRAM2

Ensembl Gene ID:

ENSAPLG00000012648

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013199

113632530 - 113637436

4907