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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113633150_113633921_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113633150 - 113633921
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGATG
5'SS Class:
strong_major
3'SS Sequence:
CCGCCCTTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAG
U12 Branch Point Sequence:
TTTTTCTCAGCC
Flanking Amino Acid:
FSFLFNNILFRMSVLLLVCL
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.4
43.3
Major BPS
71
0.52
1.5
79.6
35.6
Major PPT
64.3
0.32
1
56.8
38.7
Minor 5ss
34.5
-1.8
3.5
47.3
48.3
Minor BPS
63.6
0.41
1.8
78.43
37.1

Associated Gene:

Gene:
TRAM2
Ensembl Gene ID:
ENSAPLG00000012648
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013199
113632530 - 113637436
4907