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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113634081_113634300_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113634081 - 113634300
Intron Length:
220

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGCGGG
5'SS Class:
major
3'SS Sequence:
CCTCTCCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCGAC
U12 Branch Point Sequence:
CCTGCCGACACT
Flanking Amino Acid:
VYFTDENNEKLFNVWAVVFV
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.2
51.3
45.7
Major BPS
47.5
-0.1
1.3
43.8
40.8
Major PPT
78.7
0.64
0.7
69.4
31.3
Minor 5ss
38.6
-1.3
3.4
56.4
47.8
Minor BPS
39.8
-0.7
2.6
58.33
50.6

Associated Gene:

Gene:
TRAM2
Ensembl Gene ID:
ENSAPLG00000012648
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013199
113632530 - 113637436
4907