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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113634406_113634730_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113634406 - 113634730
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TTCCCCCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TGATACTCATTT
Flanking Amino Acid:
LAHIAGAYLLNLSRLGLILL
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
68.6
36.4
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
73.3
0.52
0.7
65.7
30.3
Minor 5ss
31.8
-2.1
2.8
37.4
33.2
Minor BPS
47.7
-0
1.9
67.33
43.1

Associated Gene:

Gene:
TRAM2
Ensembl Gene ID:
ENSAPLG00000012648
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013199
113632530 - 113637436
4907