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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113634802_113634919_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113634802 - 113634919
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CTGCCCCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTCAT
U12 Branch Point Sequence:
AGGGGATTCATT
Flanking Amino Acid:
PELYFQKVRKEDIPRQLQCI
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
74.4
0.61
1.2
77.7
37.1
Major PPT
65.5
0.35
1
57.8
38.5
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
38.3
-0.8
2.2
51.59
43.3

Associated Gene:

Gene:
TRAM2
Ensembl Gene ID:
ENSAPLG00000012648
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013199
113632530 - 113637436
4907