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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113635005_113635476_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113635005 - 113635476
Intron Length:
472

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
CCGTGCCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTACAG
U12 Branch Point Sequence:
GTGCCCCTACAG
Flanking Amino Acid:
LWENYPHVYLPFQVKFFYLC
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.3
70.1
40.6
Major BPS
43.6
-0.4
1.5
52.3
42
Major PPT
73.6
0.53
0.9
69.1
37
Minor 5ss
37.2
-1.4
3.3
55.2
42.1
Minor BPS
43
-0.6
2
47.93
44.5

Associated Gene:

Gene:
TRAM2
Ensembl Gene ID:
ENSAPLG00000012648
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013199
113632530 - 113637436
4907