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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113635536_113636933_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113635536 - 113636933
Intron Length:
1398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGCG
5'SS Class:
major
3'SS Sequence:
TTCTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CGCTGAA
U12 Branch Point Sequence:
CCTCGCTGAAGG
Flanking Amino Acid:
LIWCLYVVVTEGYISNPRSL
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
57.8
41.3
Major BPS
54.6
0.12
1.1
46.7
38.9
Major PPT
92.7
0.96
0.6
91.8
19.2
Minor 5ss
24.6
-2.9
3.3
30.6
42.7
Minor BPS
42.3
-0.7
2.1
45.08
46.9

Associated Gene:

Gene:
TRAM2
Ensembl Gene ID:
ENSAPLG00000012648
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013199
113632530 - 113637436
4907