About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113662922_113663238_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113662922 - 113663238
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
AGAGCTGGAATT
Flanking Amino Acid:
LCSKEDFCCRRRWYP*
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.5
31.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
86.6
0.82
0.7
81.4
23.5
Minor 5ss
31.6
-2.1
3.2
38.8
46.5
Minor BPS
42.7
-0.4
2
56.48
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027564
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027767
113662126 - 113680089
17964