About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113663393_113674972_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
3UTR
Intron Coordinates:
113663393 - 113674972
Intron Length:
11580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGTAGTC
5'SS Class:
major
3'SS Sequence:
ACGATTGCAACAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCACAAA
U12 Branch Point Sequence:
ACGATTGCAACA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.1
62.2
36.7
Major BPS
47.4
-0.1
1.3
53.3
38.5
Major PPT
57.5
0.17
1.1
50.9
42.2
Minor 5ss
28.2
-2.5
3.6
40.9
45.7
Minor BPS
40.4
-0.7
2
45.51
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027564
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027767
113662126 - 113680089
17964