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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113675472_113676045_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113675472 - 113676045
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTATTGCAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCTATTGCAATA
Flanking Amino Acid:
FFLLFLQGAAGNDIRCTIEG
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
65.9
40.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
66.5
0.37
1
62.4
38.5
Minor 5ss
24.4
-2.9
3.1
29.4
43.3
Minor BPS
43.4
-0.5
2.1
54.97
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027564
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027767
113662126 - 113680089
17964
Gene:
Ensembl Gene ID:
ENSAPLG00000027595
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020953
113675414 - 113676951
1538