Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113678733_113678901_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

3UTR

Intron Coordinates:

113678733 - 113678901

Intron Length:

169

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTGCA

5'SS Class:

strong_major

3'SS Sequence:

GTCTTCTCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTCAC

U12 Branch Point Sequence:

TCCTTGTCACCT

Flanking Amino Acid:

3UTR

Intron Amino Acid Position:

3UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

35.3

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

82.7

0.74

0.8

77.1

31.6

Minor 5ss

31.6

-2.1

3.3

41.1

45.4

Minor BPS

43.2

-0.4

2.4

62.74

47.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027564

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027767

113662126 - 113680089

17964