About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113684420_113684668_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113684420 - 113684668
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTCTTTAACT
Flanking Amino Acid:
FILLLVQGAAGSSLAPRNKE
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
77.5
0.62
0.9
73
37.3
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
94.7
1.48
0.6
103.9
16.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012287
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032391
113684244 - 113685815
1572
ENSAPLT00000012782
113683034 - 113685815
2782