About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113688904_113689606_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113688904 - 113689606
Intron Length:
703

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TCTCTTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
ATGCAAATACAT
Flanking Amino Acid:
SCFGFRSCCKLPWDV*
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
78.7
30.8
Major BPS
66.1
0.4
1
73
31.5
Major PPT
83.5
0.75
0.8
79.9
32.1
Minor 5ss
43.3
-0.7
3.1
64.1
41.5
Minor BPS
36.4
-0.9
2
52.87
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012251
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012746
113688679 - 113691906
3228