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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113696048_113696417_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113696048 - 113696417
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCACCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACC
Flanking Amino Acid:
VLFMVLQGVAGQHFFPRPTD
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.7
0.6
0.9
70.7
34.8
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
69.1
0.58
1.7
81.25
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031088
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024752
113695419 - 113696475
1057