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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113735537_113736293_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113735537 - 113736293
Intron Length:
757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGACTTAAAT
Flanking Amino Acid:
CSQRQKTCCIDTTSNLHTCQ
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
86
0.81
0.8
77.9
35.1
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
68.1
0.65
1.7
86.49
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011923
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012406
113734244 - 113736608
2365