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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113743200_113744283_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113743200 - 113744283
Intron Length:
1084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGGACG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
GGTCCCCTAAGT
Flanking Amino Acid:
IVILLLQDVPARGLSDSQQC
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.4
43.6
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
87.4
0.84
0.6
82
22.8
Minor 5ss
33.1
-1.9
3.1
42
44.3
Minor BPS
51.7
0.13
2
72.32
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020811
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024044
113743139 - 113744547
1409