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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113763270_113763535_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113763270 - 113763535
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCCCAT
U12 Branch Point Sequence:
CTCTCCTTGTCT
Flanking Amino Acid:
HINKLNTTWKAGHNFHNTDM
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.7
84
26.7
Major BPS
54.5
0.11
1.4
66.4
42.2
Major PPT
77.8
0.63
0.8
69.6
36.7
Minor 5ss
31.6
-2.1
2.6
37.4
40
Minor BPS
48.2
-0
3.5
78.73
44.1

Associated Gene:

Gene:
CTSB
Ensembl Gene ID:
ENSAPLG00000011195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032259
113757559 - 113803699
46141
ENSAPLT00000011714
113762199 - 113768143
5945
ENSAPLT00000044851
113757559 - 113768734
11176
ENSAPLT00000042739
113758584 - 113768713
10130