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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113763622_113764026_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
113763622 - 113764026
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAC
U12 Branch Point Sequence:
GTTCCTATAACA
Flanking Amino Acid:
TFLGGPKLPERVDFAADLDL
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
65.6
0.39
1.1
67.7
34.6
Major PPT
87.3
0.84
0.7
84.9
22.7
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
63.9
0.43
1.6
74.93
35.8

Associated Gene:

Gene:
CTSB
Ensembl Gene ID:
ENSAPLG00000011195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042739
113758584 - 113768713
10130
ENSAPLT00000032259
113757559 - 113803699
46141
ENSAPLT00000011714
113762199 - 113768143
5945
ENSAPLT00000044851
113757559 - 113768734
11176