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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_113764142_113764405_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
113764142 - 113764405
Intron Length:
264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
GGGTTGCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATTT
Flanking Amino Acid:
RDQGSCGSCWAFGAVEAISD
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
36.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
62.3
0.28
1
53.8
41.6
Minor 5ss
30.3
-2.3
3.2
31.5
42.2
Minor BPS
57.6
0.32
1.8
76.35
41

Associated Gene:

Gene:
CTSB
Ensembl Gene ID:
ENSAPLG00000011195
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044851
113757559 - 113768734
11176
ENSAPLT00000042739
113758584 - 113768713
10130
ENSAPLT00000032259
113757559 - 113803699
46141
ENSAPLT00000011714
113762199 - 113768143
5945